1. consensusOV::GSE14764.eset
    Sample ExpressionSet from MetaGxOvarian
    ExpressionSet
  2. CREAM::COREs
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  106. mRMRe::cgps.annot
    Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
  107. mRMRe::cgps.ge
    Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
    matrix|200 x 1000
  108. mRMRe::cgps.ic50
    Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
  109. PDATK::CSPC_MAE
    A 'MultiAssayExperiment' containing cohorts of pancreatic cancer patients, for use in package examples.
    MultiAssayExperiment
  110. PDATK::birnbaum
    Published classifier gene signature for Birnbaum
  111. PDATK::chen
    Published classifier gene signature for Chen
  112. PDATK::cohortSubtypeDFs
    A list of sample subtypes for the data in sampleCohortList
  113. PDATK::haiderSigScores
    Classifier survival scores for Haider
  114. PDATK::sampleClinicalModel
    Sample ClinicalModel Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    ClinicalModel
  115. PDATK::sampleCohortList
    A Set of Example Patient Cohorts
    CohortList
  116. PDATK::sampleICGCmicro
    A Sample SurvivalExperiment Containing Data from the ICGC micro-array cohort from 'MetaGxPancreas'
    SurvivalExperiment
  117. PDATK::samplePCOSPmodel
    A Sample PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
  118. PDATK::samplePCOSPpredList
    Sample CohortList with PCOSP Risk Predictions
    CohortList
  119. PDATK::samplePCSIsurvExp
    Sample SurvivalExperiment Containing the PCSI rna-sequencing cohort from 'MetaGxPancreas'.
    SurvivalExperiment
  120. PDATK::sampleRGAmodel
    Sample RGA Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    RGAModel
  121. PDATK::sampleRLSmodel
    Sample RLS Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
    RLSModel
  122. PDATK::sampleTrainedPCOSPmodel
    A Sample Trained PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
  123. PDATK::sampleValPCOSPmodel
    Sample Validated PCOSP Model for Plotting Examples
  124. PharmacoGx::CCLEsmall
    Cancer Cell Line Encyclopedia (CCLE) Example PharmacoSet
    PharmacoSet
  125. PharmacoGx::CMAPsmall
    Connectivity Map Example PharmacoSet
    PharmacoSet
  126. PharmacoGx::GDSCsmall
    Genomics of Drug Sensitivity in Cancer Example PharmacoSet
    PharmacoSet
  127. PharmacoGx::HDAC_genes
    HDAC Gene Signature
  128. Xeva::PDXMI
    PDX-MI data
  129. Xeva::brca
    PDXE breast cancer dataset
    XevaSet
  130. Xeva::repdx
    Example PDX dataset
    XevaSet