- consensusOV::GSE14764.esetSample ExpressionSet from MetaGxOvarian
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- mRMRe::cgps.annotPart of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
- mRMRe::cgps.gePart of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
- mRMRe::cgps.ic50Part of the large pharmacogenomic dataset published by Garnett et al. within the Cancer Genome Project (CGP)
- PDATK::CSPC_MAEA 'MultiAssayExperiment' containing cohorts of pancreatic cancer patients, for use in package examples.
- PDATK::birnbaumPublished classifier gene signature for Birnbaum
- PDATK::chenPublished classifier gene signature for Chen
- PDATK::cohortSubtypeDFsA list of sample subtypes for the data in sampleCohortList
- PDATK::haiderSigScoresClassifier survival scores for Haider
- PDATK::sampleClinicalModelSample ClinicalModel Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
- PDATK::sampleCohortListA Set of Example Patient Cohorts
- PDATK::sampleICGCmicroA Sample SurvivalExperiment Containing Data from the ICGC micro-array cohort from 'MetaGxPancreas'
- PDATK::samplePCOSPmodelA Sample PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
- PDATK::samplePCOSPpredListSample CohortList with PCOSP Risk Predictions
- PDATK::samplePCSIsurvExpSample SurvivalExperiment Containing the PCSI rna-sequencing cohort from 'MetaGxPancreas'.
- PDATK::sampleRGAmodelSample RGA Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
- PDATK::sampleRLSmodelSample RLS Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
- PDATK::sampleTrainedPCOSPmodelA Sample Trained PCOSP Model Containing the ICGC micro-array cohort from 'MetaGxPancreas' as training data.
- PDATK::sampleValPCOSPmodelSample Validated PCOSP Model for Plotting Examples
- PharmacoGx::CCLEsmallCancer Cell Line Encyclopedia (CCLE) Example PharmacoSet
- PharmacoGx::CMAPsmallConnectivity Map Example PharmacoSet
- PharmacoGx::GDSCsmallGenomics of Drug Sensitivity in Cancer Example PharmacoSet
- PharmacoGx::HDAC_genesHDAC Gene Signature
- Xeva::PDXMIPDX-MI data
- Xeva::brcaPDXE breast cancer dataset
- Xeva::repdxExample PDX dataset