{
  "_id": "6a1f27bcb401979e73422cae",
  "Package": "CREAM",
  "Type": "Package",
  "Title": "Clustering of Genomic Regions Analysis Method",
  "Version": "1.1.1",
  "Date": "2018-05-30",
  "Authors@R": "c(\nperson(\"Seyed Ali\", \"Madani Tonekaboni\", , email = \"ali.madanitonekaboni@mail.utoronto.ca\", role = c(\"aut\")),\nperson(\"Victor\", \"Kofia\", , email = \"victor.kofia@uhnresearch.ca\", role = c(\"aut\")),\nperson(\"Mathieu\", \"Lupien\", , email = \"mlupien@uhnres.utoronto.ca\", role = c(\"aut\")),\nperson(\"Benjamin\", \"Haibe-Kains\", , email = \"benjamin.haibe.kains@utoronto.ca\", role = c(\"aut\", \"cre\"))\n)",
  "Description": "Provides a new method for identification of clusters of\ngenomic regions within chromosomes. Primarily, it is used for\ncalling clusters of cis-regulatory elements (COREs). 'CREAM'\nuses genome-wide maps of genomic regions in the tissue or cell\ntype of interest, such as those generated from chromatin-based\nassays including DNaseI, ATAC or ChIP-Seq. 'CREAM' considers\nproximity of the elements within chromosomes of a given sample\nto identify COREs in the following steps: 1) It identifies\nwindow size or the maximum allowed distance between the\nelements within each CORE, 2) It identifies number of elements\nwhich should be clustered as a CORE, 3) It calls COREs, 4) It\nfilters the COREs with lowest order which does not pass the\nthreshold considered in the approach.",
  "License": "GPL (>= 3)",
  "URL": "https://github.com/bhklab/CREAM",
  "RoxygenNote": "6.0.1",
  "Roxygen": "list(markdown = TRUE)",
  "LazyData": "true",
  "biocViews": "PeakDetection, FunctionalPrediction, BiomedicalInformatics,\nClustering",
  "BugReports": "https://github.com/bhklab/CREAM/issues",
  "Encoding": "UTF-8",
  "Repository": "https://bhklab.r-universe.dev",
  "Date/Publication": "2021-02-11 01:54:32 UTC",
  "RemoteUrl": "https://github.com/bhklab/cream",
  "RemoteRef": "HEAD",
  "RemoteSha": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-16 05:29:11 UTC",
    "User": "root"
  },
  "Author": "Seyed Ali Madani Tonekaboni [aut],\nVictor Kofia [aut],\nMathieu Lupien [aut],\nBenjamin Haibe-Kains [aut, cre]",
  "Maintainer": "Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>",
  "MD5sum": "367584d69b186de1255d905a500918b6",
  "_user": "bhklab",
  "_type": "src",
  "_file": "CREAM_1.1.1.tar.gz",
  "_fileid": "d3a76fc9ddb42299e6a9b7060542d33da55a47a7749b7180ed2a6e619018ebf9",
  "_filesize": 2674979,
  "_sha256": "d3a76fc9ddb42299e6a9b7060542d33da55a47a7749b7180ed2a6e619018ebf9",
  "_created": "2026-05-16T05:29:11.000Z",
  "_published": "2026-06-02T18:58:04.826Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79149000707,
      "time": 127,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7030830561"
    },
    {
      "job": 79149000816,
      "time": 105,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7030827460"
    },
    {
      "job": 79149000601,
      "time": 155,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7030833789"
    },
    {
      "job": 79149000807,
      "time": 131,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7030830778"
    },
    {
      "job": 79149000327,
      "time": 128,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7030813533"
    },
    {
      "job": 79148999942,
      "time": 83,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7367102788"
    },
    {
      "job": 79149000582,
      "time": 101,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7030826798"
    },
    {
      "job": 79149000715,
      "time": 93,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7030825842"
    },
    {
      "job": 79149001136,
      "time": 71,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7030823258"
    }
  ],
  "_buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bhklab/cream",
  "_commit": {
    "id": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
    "author": "Seyed Ali Madani Tonekaboni <ali.madani.1368@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "optimization in window size identification",
    "time": 1613008472
  },
  "_maintainer": {
    "name": "Benjamin Haibe-Kains",
    "email": "benjamin.haibe.kains@utoronto.ca",
    "login": "bhaibeka",
    "uuid": 594954
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "bhklab",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "peakdetection",
    "functionalprediction",
    "biomedicalinformatics",
    "clustering",
    "biomedical-informatics",
    "functional-prediction",
    "peak-detection"
  ],
  "_stars": 14,
  "_contributors": [
    {
      "user": "kofiav",
      "count": 44,
      "uuid": 4621203
    },
    {
      "user": "alimadani",
      "count": 41,
      "uuid": 10885478
    },
    {
      "user": "christophereeles",
      "count": 7,
      "uuid": 44755307
    },
    {
      "user": "bhaibeka",
      "count": 1,
      "uuid": 594954
    }
  ],
  "_userbio": {
    "uuid": 12865570,
    "type": "organization",
    "name": "BHKLAB",
    "description": "The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre"
  },
  "_downloads": {
    "count": 174,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/CREAM"
  },
  "_mentions": 16,
  "_devurl": "https://github.com/bhklab/cream",
  "_searchresults": 15,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/CREAM.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bhklab/cream",
  "_realowner": "bhklab",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2017-10-27"
    },
    {
      "version": "1.1.0",
      "date": "2018-01-05"
    },
    {
      "version": "1.1.1",
      "date": "2018-06-06"
    }
  ],
  "_exports": [
    "CREAM",
    "ElementRecog",
    "PeakMinFilt",
    "WindowSizeRecog",
    "WindowVec"
  ],
  "_datasets": [
    {
      "name": "COREs",
      "title": "",
      "object": "A549_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Ag04449_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Ag04450_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Ag09309_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Ag09319_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Ag10803_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Aoaf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Be2c_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Bj_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Caco2_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Cd20ro01778_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Gm04503_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Gm04504_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Gm06990_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Gm12865_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Gm12878_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "H1hesc_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "H7esDiffa14d_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "H7esDiffa5d_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "H7es_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hac_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hae_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hah_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hasp_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hbmec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hbvsmc_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hcf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hcfaa_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hcm_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hconf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hcpe_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hct116_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hee_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Helas3_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hepg2_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hff_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hffmyc_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hgf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hipe_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hl60_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmvecdad_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmvecdblad_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmvecdblneo_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmvecdlyad_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmvecdlyneo_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmvecdneo_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmveclbl_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hmveclly_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hnpce_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hpaf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hpdlf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hpf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hrce_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hrgec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hsmm_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hsmmt_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Huvec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Hvmf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Jurkat_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znf2c10c5_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znf4c50c4_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znf4g7d3_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znfa41c6_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znfb34a8_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znfe103c6_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znff41b2_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znfg54a11_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562Znfp5_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "K562_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Lhcnm2Diff4d_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Lhcnm2_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Lncap_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "M059j_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Mcf7Est100nm1h_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Mcf7Estctrl0h_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Mcf7_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Monocd14_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Monocd14ro1746_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Msc_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nb4_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nha_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nhbera_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nhdfad_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nhdfneo_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nhek_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nhlf_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Nt2d1_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Panc1_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Prec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Rpmi7951_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Rptec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Saec_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Skmc_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Sknmc_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Sknshra_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "T47d_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Th1_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Th1wb54553204_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Th2_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Werirb1_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Wi38Ohtam_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    },
    {
      "name": "COREs",
      "title": "",
      "object": "Wi38_COREs",
      "class": [
        "data.frame"
      ],
      "fields": [
        "V1",
        "V2",
        "V3"
      ],
      "rows": 3998,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "CREAM",
      "title": "CREAM is the main function for CORE identification",
      "topics": [
        "CREAM"
      ]
    },
    {
      "page": "ElementRecog",
      "title": "ElementRecog is a function to identify COREs",
      "topics": [
        "ElementRecog"
      ]
    },
    {
      "page": "PeakMinFilt",
      "title": "PeakMinFilt is a function to filter the lowest Order of COREs which distance between functional regions is close to the corresponding Window Size",
      "topics": [
        "PeakMinFilt"
      ]
    },
    {
      "page": "WindowSizeRecog",
      "title": "WindowSizeRecog is a function to specify window size for each order of COREs",
      "topics": [
        "WindowSizeRecog"
      ]
    },
    {
      "page": "WindowVec",
      "title": "WindowVec is a function to specify window size for each order of COREs",
      "topics": [
        "WindowVec"
      ]
    }
  ],
  "_readme": "https://github.com/bhklab/cream/raw/HEAD/README.md",
  "_rundeps": [],
  "_score": 5.498310553789601,
  "_indexed": true,
  "_nocasepkg": "cream",
  "_universes": [
    "bhklab",
    "bhaibeka"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.1.1",
      "date": "2026-05-16T05:30:58.000Z",
      "distro": "noble",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "faf189d8909aaf7811102e2d53025760b1dd6612c588649b2211e99e89f65593",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.1.1",
      "date": "2026-05-16T05:31:01.000Z",
      "distro": "noble",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "ae4bce8dac2651cd539077ee161379700563351916bf5f5c02354a9a40d7e802",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.1.1",
      "date": "2026-05-16T05:31:50.000Z",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "f1db45c662cff1292df6019f5fc5ca3444786d775dda19d2d06afff1d635b1c7",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.1.1",
      "date": "2026-05-16T05:31:27.000Z",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "1945f61a16c2e8a527df731252ba87f867c1ce51245cc528b32cdb918bcd4ae4",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.1.1",
      "date": "2026-05-16T05:30:23.000Z",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "9b332a62fb1282dfcbe61f5dedef0c5da72da09a5a8c193ef9990f091957c4e4",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.1.1",
      "date": "2026-05-16T05:30:39.000Z",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "15028be251d90e2b620d1f7fc6c89566c6901ea1181b043475cdbd67306a99b6",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.1.1",
      "date": "2026-05-16T05:30:22.000Z",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "72c1b6ac7a22c8c12f44eca160b9ff8806a9bf78540240b071d134dd23e321a3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.1.1",
      "date": "2026-06-02T18:57:46.000Z",
      "commit": "718264747fd4f6886ffcfc260d70fb2b2892b04d",
      "fileid": "9a12530dffff16bf06aa291a8b24d86890563aa641e9c8319d13c4e2b820cefd",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bhklab/actions/runs/25953852079"
    }
  ]
}