{ "_id": "6a57430eff0138dec5d6fc92", "Package": "CREAM", "Type": "Package", "Title": "Clustering of Genomic Regions Analysis Method", "Version": "1.1.1", "Date": "2018-05-30", "Authors@R": "c(\nperson(\"Seyed Ali\", \"Madani Tonekaboni\", , email = \"ali.madanitonekaboni@mail.utoronto.ca\", role = c(\"aut\")),\nperson(\"Victor\", \"Kofia\", , email = \"victor.kofia@uhnresearch.ca\", role = c(\"aut\")),\nperson(\"Mathieu\", \"Lupien\", , email = \"mlupien@uhnres.utoronto.ca\", role = c(\"aut\")),\nperson(\"Benjamin\", \"Haibe-Kains\", , email = \"benjamin.haibe.kains@utoronto.ca\", role = c(\"aut\", \"cre\"))\n)", "Description": "Provides a new method for identification of clusters of\ngenomic regions within chromosomes. Primarily, it is used for\ncalling clusters of cis-regulatory elements (COREs). 'CREAM'\nuses genome-wide maps of genomic regions in the tissue or cell\ntype of interest, such as those generated from chromatin-based\nassays including DNaseI, ATAC or ChIP-Seq. 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