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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "CREAM" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'CREAM: Clustering of Genomic Regions Analysis Method'
version: 1.1.1
doi: 10.32614/CRAN.package.CREAM
abstract: 'Provides a new method for identification of clusters of genomic regions
  within chromosomes. Primarily, it is used for calling clusters of cis-regulatory
  elements (COREs). ''CREAM'' uses genome-wide maps of genomic regions in the tissue
  or cell type of interest, such as those generated from chromatin-based assays including
  DNaseI, ATAC or ChIP-Seq. ''CREAM'' considers proximity of the elements within chromosomes
  of a given sample to identify COREs in the following steps: 1) It identifies window
  size or the maximum allowed distance between the elements within each CORE, 2) It
  identifies number of elements which should be clustered as a CORE, 3) It calls COREs,
  4) It filters the COREs with lowest order which does not pass the threshold considered
  in the approach.'
authors:
- family-names: Madani Tonekaboni
  given-names: Seyed Ali
  email: ali.madanitonekaboni@mail.utoronto.ca
- family-names: Kofia
  given-names: Victor
  email: victor.kofia@uhnresearch.ca
- family-names: Lupien
  given-names: Mathieu
  email: mlupien@uhnres.utoronto.ca
- family-names: Haibe-Kains
  given-names: Benjamin
  email: benjamin.haibe.kains@utoronto.ca
repository: https://bhklab.r-universe.dev
repository-code: https://github.com/bhklab/CREAM
commit: 718264747fd4f6886ffcfc260d70fb2b2892b04d
url: https://github.com/bhklab/CREAM
date-released: '2018-05-30'
contact:
- family-names: Haibe-Kains
  given-names: Benjamin
  email: benjamin.haibe.kains@utoronto.ca